All Questions
126
questions
2
votes
1
answer
16
views
How to write Links in Comments
What's the syntax when trying to embed links in comments?
For instance here I tried and failed.
What I tried:
[url = "www.internet.com"]words here[/url]
[url = www.internet.com]words here[/...
terdonMod
- 9,662
4
votes
1
answer
27
views
Should the help page "What topics can I ask about here?" be edited from the default?
Every site in the Stack Exchange network has an article entitled What topics can I ask about here?. This article helps new visitors to the site understand site norms and whether their potential ...
- 839
2
votes
1
answer
43
views
Consensus on when markdown code formatting should be used
I've noticed that there is some missuse of markdown code formatting here. Before I go around editing it out, it would be good to come to a consensus on when it is ...
CommunityBot
- 1
1
vote
2
answers
40
views
Answer in comment was deleted - what is the protocol on this site?
I seen a question whilst I was browsing (KeyError '/n' in Bio SeqUtils Package ProtParam Script) and guessed the likely issue and thus added a comment advising the user to use ...
- 101
4
votes
0
answers
42
views
Notification of Mod action on SE
Stackexchange (SE) is currently subject to 'Mod action' over its policy towards ChatGPT content.
SE's initial policy is effectively to ignore ChatGPT (advanced AI) generated content if it was posted ...
M__Mod
- 11.9k
3
votes
0
answers
16
views
2022: a year in moderation
As we say goodbye to the old year and welcome the new one, we have a tradition of sharing moderation stats for the preceding calendar year.
As most of you here are aware, sites on the Stack Exchange ...
- 101
4
votes
1
answer
22
views
what happened to the biopython tag?
What happened to the [biopython] tag? Bioinformatics stack exchange says 0 related question to it? Is it normal? I saved a biopython tag in one of my question filters so it was working once.
- 1,679
1
vote
2
answers
35
views
Biological/bioinformatic context to a question
The mods had a discussion about whether a coding question was valid without any stated relevance to bioinformatics, a typical question is "here's a bit of text how do I parse it?". The issue ...
gringerMod
- 13.8k
7
votes
0
answers
33
views
PSA: Please don't post images of text
When asking or answering questions, please don't post screenshots of text. This is a very bad idea because:
You can't copy/paste the commands into answers, google searches, local files to work on a ...
terdonMod
- 9,662
8
votes
1
answer
84
views
2022 Community Moderator Election Results
Bioinformatics's second moderator election has come to a close. Since there were not enough candidates for a competitive election, we simply appointed the candidates who nominated themselves as pro-...
- 101
6
votes
2
answers
226
views
2022 Potential Moderator Election: Community Interest Check
UPDATE: The election has now been scheduled. Thanks for all who expressed interest in nominating.
The last bioinfo mod elections happened 465 days ago and with the recent power vacuum created by my ...
- 101
3
votes
0
answers
31
views
2022 Community Moderator Election
The 2022 Community Moderator Election is now underway!
Community moderator elections have three phases:
Nomination phase
Primary phase
Election phase
Most elections take between two and three weeks, ...
- 101
6
votes
0
answers
88
views
2022 Moderator Election Q&A – Question Collection
The purpose of this thread was to collect questions for the questionnaire. The questionnaire is now live, and you may find it here.
Bioinformatics Stack Exchange is scheduled for an election next ...
- 101
5
votes
0
answers
71
views
Announcing a “Graduation” election for 2022
Summary: Bioinformatics Stack Exchange will begin the nomination stage for an election on September 19th, 2022, as your “graduation” election!
The timeline:
On September 12, 2022, I'll post a ...
- 101
8
votes
1
answer
58
views
Message from a shy user
How can I make sure I'm not distracting researchers from their work, with a bunch of questions.
I feel I could ask a lot, primarily because I have studied very little.
I don't think I could ask a lot, ...
terdonMod
- 9,662
2
votes
2
answers
73
views
Citing BioSE as algorithm support
I am seeking permission to cite https://bioinformatics.stackexchange.com as support for a new algorithm to identify specific mutations across large sequence databases. There isn't an equivalent ...
gringerMod
- 13.8k
6
votes
1
answer
124
views
I am resigning as a moderator
it's been an honour to help the bioinfo.SE to be a clean, constructive and kind space for sharing our expertise in bioinformatics. However, I recently quit my job and taking some time off and I don't ...
- 5,517
0
votes
1
answer
20
views
Request to delete answer on WDL question
Could the mods kindly look at the 'answer' to:
Pulling Multiple Files via rsync with WDL
Its been there 17 hours. The username is also an issue. I've no links to WDL, but the post is intentional ...
- 19.6k
0
votes
2
answers
49
views
Anonymous public criticism of anonymous peer review
There's a current post which discusses and criticises a manuscript the OP received, which would almost certainly be part of the anonymous peer review process:
Is DEGSeq software appropriate for gene ...
gringerMod
- 13.8k
2
votes
0
answers
40
views
Broad Institute and support for OpenWDL on Bioinformatics SE
I spotted a chat from @Geraldine_VdAuwe, almost certainly Geraldine A. Van der Auwera from the Broad Institute and one of the authors of Genomics in the Cloud by O'...
gringerMod
- 13.8k
7
votes
1
answer
128
views
Where is the review button?
When I signed up for the site and look up in the part were the review button was suppose to be it wasn't there as indicated by this screen shot here.
This seems kind of weird considering the fact ...
- 101
1
vote
2
answers
50
views
Is 'low effort post' a valid close reason?
I noticed a post today with a close vote, with the reason being something along the lines of:
This is a very low effort post which could be solved with the first
google hit
I'm not doubting that's ...
M__Mod
- 11.9k
2
votes
2
answers
50
views
How much mod cleaning is too much mod cleaning?
I bringing this up, because I think that is something we should discuss before it becomes too much of a problem.
There are members of community that feel there is too much moderation. The trigger for ...
gringerMod
- 13.8k
1
vote
2
answers
23
views
Review queue: first question and first answer silver awards
I have a distinct hunch that the 'silver badge award' statistics for first question and first answer sections of the review queue have been 'zeroed', possibily following the upgrade from ...
- 5,517
5
votes
3
answers
58
views
Can questions in pharmacometrics fit in the Bioinformatics stackexchange?
Pharmacometrics is an interdiciplinary field which in short tries to answer questions about drugs and drug development (specifically pharmacokinetics nd pharmacodynamics given trial data) using ...
- 2,236
2
votes
0
answers
18
views
2021: a year in moderation
As we say goodbye to the old year and welcome the new one, we have a tradition of sharing moderation stats for the preceding calendar year.
As most of you here are aware, sites on the Stack Exchange ...
- 101
3
votes
2
answers
51
views
When was the site elevated from Beta status?
When was the big date Bioinformatics SE was no longer a beta site?
I would have thought there would have been fireworks and celebrations, or at least an announcement on this forum. Its certainly ...
- 5,517
6
votes
3
answers
88
views
Deleting comments before the question is answered
I received an email stating I have unread items in SE inbox. When I clicked on the link, the comments had already been deleted. I remember having a discussion with the OP in the comment section not ...
gringerMod
- 13.8k
4
votes
2
answers
165
views
About posting queries in stack bioinformatics
If I have posted a question in Biostars and have not obtained answers, can I use the same query for finding answers in Stack bioinformatics?
- 4,234
10
votes
2
answers
164
views
Moderators: Please do not close questions just because they are old
I just had an old question of mine closed by a moderator with the following comment:
I’m voting to close this question because it was asked a long time ago, and it is likely that an answer is no ...
gringerMod
- 13.8k
0
votes
0
answers
28
views
Would someone be able to migrate my question?
I don't have the requisite 250 rep required to migrate a question to https://biology.stackexchange.com/.
Would a mod be able to do that?
- 101
1
vote
2
answers
52
views
Adding additional question guidance
I've noticed that the best Bioinformatics SE questions are where people ask about a specific problem they're having with their own data (or programs they're using). How would people feel about putting ...
gringerMod
- 13.8k
7
votes
0
answers
59
views
2021 Community Moderator Election Results
Bioinformatics Stack Exchange's first moderator election has come to a close, the votes have been tallied, and the two new moderators are:
They'll be joining the existing crew shortly — please thank ...
- 101
4
votes
2
answers
156
views
2021 Potential Moderator Election: Community Interest Check [duplicate]
It's time for us all to consider holding an election for a new volunteer moderators on Bioinformatics.
Three moderators were appointed when this site was created back in 2017. Since then most of them ...
terdonMod
- 9,662
1
vote
0
answers
33
views
2021 Community Moderator Election
The 2021 Community Moderator Election is now underway!
Community moderator elections have three phases:
Nomination phase
Primary phase
Election phase
Most elections take between two and three weeks, ...
CommunityBot
- 1
4
votes
0
answers
54
views
Announcing a Pro Tempore election
Summary: Bioinformatics Stack Exchange will begin the nomination stage for a special election on April 12 to bring in two more moderators.
For full details of the process, see the announcement on Meta ...
- 101
0
votes
0
answers
75
views
2020: a year in moderation
As we say goodbye to the old year and welcome the new one, we have a tradition of sharing moderation stats for the past 12 months.
As most of you here are aware, sites on the Stack Exchange network ...
- 101
2
votes
1
answer
111
views
Vote to undelete question ... and rationale
I triggerd a vote to undelete a question entitled
I have used TER to break the long bonds of a chain in my PDB
The question is here, deleted by the OP after it was answered by a member of the site ...
- 19.6k
3
votes
1
answer
109
views
Duplicate OPs and OP deletion of response postings
There was a recent issue on Bioinfo SE here on a question about compiling gromacs for CPU or GPU (below).
It appears a question was deleted together with @MatteoFerla's response and one question ...
- 19.6k
2
votes
0
answers
87
views
UniProt survey: Tell us what protein information is important to you
Please consider filling in this survey, on behalf of UniProt:
As biological data is growing at an exponential rate, we also have to prioritise the protein information we present. In order to help us ...
4
votes
2
answers
134
views
Should something be done about frozen "main" chatroom?
I have noticed that the "main" chatroom for this site has been frozen. By the main chatroom I mean the room which was created when the site was created with the description "General ...
M__Mod
- 11.9k
1
vote
1
answer
141
views
Why does @gringer have a wiki tag?
Whilst editing the sites wiki tags I noted that @gringer was listed, alongside including formal technical nomenclature such as population genetics, allele frequencies, haplotype networks, synonymous ...
- 175
3
votes
2
answers
236
views
Bioinformatics, biostatistics and computational biology
I am wondering how others define the boundaries between bioinformatics, biostatistics, and computational biology.
In academic setting these three are treated as more or less equivalent terms or as ...
- 4,234
6
votes
1
answer
135
views
I'm a bioinfo software developer, and I would like to use bioinformatics SE as the main platform for Q&A
I'm an author of bioinformatic software and I would like to use this stackexchange as the main platform for questions and answers (indicate this in the README). The software is recent and there is no ...
- 19.6k
19
votes
2
answers
195
views
Community promotion ads
Shall we start a small advertising campaign?
Some Stack Exchange communities vote on “community ads” — banners that link to other resources related to the topic. Highly voted proposals get free ad ...
M__Mod
- 11.9k
2
votes
1
answer
88
views
Importance of protecting questions
A new member has responded to a "SARS-CoV-2 synthetic origin" questions here and here with a "human origin" opinion expressed in a verbose, aggressive and non-technical manner.
I have now protected ...
- 19.6k
4
votes
1
answer
61
views
Updating a tool-related tag to match the tool's name - markduplicate -> markduplicates
I had a question related to Picard's MarkDuplicates tool, and wanted to tag the question accordingly. There is an existing tag, called "markduplicate" but the tool's name is spelled differently.
...
1
vote
2
answers
134
views
Should we allow questions about the coronavirus?
As the flood of information, from around the world, comes in concerning the pandemic; should we create a coronavirus-bioinformatics tag and try to apply the principals of bioinformatics to it? This ...
M__Mod
- 11.9k
1
vote
1
answer
80
views
Adverts on Bioinfo SE
There is currently, essentially an advert on Bioinfo SE in another disguise here. Is there any fast-track system for removing it without the standard "close vote" system?
The "close vote" system ...
- 19.6k
3
votes
2
answers
83
views
"Synthetic" instead of "man-made"?
A question on Bioinformatics SE is about the possibility of coronavirus having been engineered in the lab and the question title includes the phrase "man-made", which, in my opinion, is an example of ...
M__Mod
- 11.9k